Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: rnf40 ENSDARG00000054201

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Description

ring finger protein 40 [Source:NCBI gene (formerly Entrezgene);Acc:798088]

Location

Chromosome 12: 28,910,762-28,933,282 forward strand.

GRCz11:CM002896.2

About this gene

This gene has 3 transcripts (splice variants), 198 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000076342.5	rnf40-201	3033	1010aa	ENSDARP00000070816.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AB32U5A5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000160939.2	rnf40-203	3803	1004aa	ENSDARP00000130936.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AB13AA29	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000076572.5	rnf40-202	1403	331aa	ENSDARP00000071044.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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