Gene: nphp1 ENSDARG00000009046

Description

nephronophthisis 1 [Source:ZFIN;Acc:ZDB-GENE-060929-1234]

Gene Synonyms

im:7162391, wu:fi59g07, zgc:152930

Location

GRCz11:CM002901.2

About this gene

This gene has 2 transcripts (splice variants), 201 orthologues and is associated with 16 phenotypes.

Transcripts

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000063716.7	nphp1-201	2240	667aa	ENSDARP00000063715.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000141684.2	nphp1-202	962	226aa	ENSDARP00000112995.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary