Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SMNDC1 ENSDARG00000056235

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Description

survival motor neuron domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-614]

Gene Synonyms

TDRD10, spf30, wu:fb37h07, wu:fc23a07

Location

Chromosome 17: 20,237,727-20,243,962 forward strand.

GRCz11:CM002901.2

About this gene

This gene has 2 transcripts (splice variants), 217 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000031547.6	SMNDC1-201	1440	237aa	ENSDARP00000038215.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B2GRC5 Q7ZV80	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000180115.1	SMNDC1-202	2152	237aa	ENSDARP00000146987.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B2GRC5 Q7ZV80	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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