Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PHF21A ENSDARG00000021378

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Description

PHD finger protein 21Ab [Source:ZFIN;Acc:ZDB-GENE-030131-6456]

Location

Chromosome 25: 7,718,967-7,764,083 reverse strand.

GRCz11:CM002909.2

About this gene

This gene has 6 transcripts (splice variants), 205 orthologues, 10 paralogues and is associated with 9 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000181858.1	PHF21A-205	3121	828aa	ENSDARP00000153243.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M9PN25	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000021577.11	PHF21A-203	3367	796aa	ENSDARP00000019987.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000179800.1	PHF21A-206	3028	797aa	ENSDARP00000150633.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QB31	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000126499.3	PHF21A-204	2328	745aa	ENSDARP00000111141.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000142439.2	PHF21A-202	881	168aa	ENSDARP00000122872.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000146882.2	PHF21A-201	260	87aa	ENSDARP00000114626.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

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Summary

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