Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: LSM2 ENSDARG00000103066

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Description

si:ch73-14h10.2 [Source:NCBI gene (formerly Entrezgene);Acc:100331917]

Location

Chromosome 6: 28,205,296-28,211,513 forward strand.

GRCz11:CM002890.2

About this gene

This gene has 6 transcripts (splice variants), 199 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000190509.1	LSM2-206	4736	95aa	ENSDARP00000156037.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5RKP8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000171377.2	LSM2-203	812	76aa	ENSDARP00000130821.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000166988.2	LSM2-202	547	70aa	ENSDARP00000131633.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000167389.2	LSM2-204	487	70aa	ENSDARP00000131699.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000171216.2	LSM2-205	472	34aa	ENSDARP00000140740.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000164466.2	LSM2-201	348	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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