Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Cellular component
- GO: Biological process
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: pdlim5a ENSDARG00000101777

.

Description

PDZ and LIM domain 5a [Source:ZFIN;Acc:ZDB-GENE-040718-401]

Location

Chromosome 5: 7,722,017-7,844,265 reverse strand.

GRCz11:CM002889.2

About this gene

This gene has 5 transcripts (splice variants), 207 orthologues and 9 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000162626.2	pdlim5a-203	2944	551aa	ENSDARP00000135287.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IN44	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000191910.1	pdlim5a-205	4208	326aa	ENSDARP00000148644.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000157661.2	pdlim5a-201	3781	332aa	ENSDARP00000135718.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M9QDR0	-
ENSDART00000158374.2	pdlim5a-202	1659	551aa	ENSDARP00000132622.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IN44	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000165586.2	pdlim5a-204	546	128aa	ENSDARP00000133286.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

.

Summary

.

.