Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: atg16l1 ENSDARG00000099430

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Description

ATG16 autophagy related 16-like 1 (S. cerevisiae) [Source:NCBI gene (formerly Entrezgene);Acc:550552]

Location

Chromosome 15: 45,591,669-45,637,460 forward strand.

GRCz11:CM002899.2

About this gene

This gene has 4 transcripts (splice variants), 206 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000157450.2	atg16l1-201	1866	621aa	ENSDARP00000130065.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AB32T1C2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000157459.2	atg16l1-202	4727	606aa	ENSDARP00000137052.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M1N5D3	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000170214.2	atg16l1-204	990	330aa	ENSDARP00000141821.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000161937.2	atg16l1-203	699	233aa	ENSDARP00000138160.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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