Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: zgc:86896 ENSDARG00000090369

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Description

zgc:86896 [Source:ZFIN;Acc:ZDB-GENE-040625-80]

Location

Chromosome 3: 36,275,633-36,286,650 forward strand.

GRCz11:CM002887.2

About this gene

This gene has 5 transcripts (splice variants), 93 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000102883.6	zgc:86896-201	1603	357aa	ENSDARP00000093657.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A9JRP8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000185027.1	zgc:86896-205	4168	361aa	ENSDARP00000154173.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000149532.3	zgc:86896-203	1451	357aa	ENSDARP00000123754.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A9JRP8	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000148444.2	zgc:86896-202	794	218aa	ENSDARP00000124210.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000150996.2	zgc:86896-204	719	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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