Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: tsnare1 ENSDARG00000088650

.

Description

T-SNARE Domain Containing 1 [Source:ZFIN;Acc:ZDB-GENE-100922-189]

Location

Chromosome 16: 37,166,572-37,470,042 reverse strand.

GRCz11:CM002900.2

About this gene

This gene has 4 transcripts (splice variants), 148 orthologues, 17 paralogues and is associated with 2 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000188823.1	tsnare1-204	4699	287aa	ENSDARP00000151629.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IK07	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000142916.3	tsnare1-203	3971	287aa	ENSDARP00000133951.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IK07	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000124090.3	tsnare1-201	1560	287aa	ENSDARP00000131506.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IK07	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000140639.2	tsnare1-202	787	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

.

Summary

.

.