Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: si:ch211-212k18.8 ENSDARG00000086421

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Description

si:ch211-212k18.8 [Source:ZFIN;Acc:ZDB-GENE-041111-14]

Location

Chromosome 7: 19,495,379-19,502,294 forward strand.

GRCz11:CM002891.2

About this gene

This gene has 5 transcripts (splice variants), 86 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000173774.2	si:ch211-212k18.8-204	797	221aa	ENSDARP00000142683.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000180514.1	si:ch211-212k18.8-205	3659	216aa	ENSDARP00000151038.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000125584.4	si:ch211-212k18.8-201	1089	214aa	ENSDARP00000104578.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M9QHJ9	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000173684.2	si:ch211-212k18.8-202	830	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000173766.2	si:ch211-212k18.8-203	723	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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