Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: col28a1a ENSDARG00000077084

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Description

collagen, type XXVIII, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070705-84]

Gene Synonyms

col28a1, si:ch211-174d12.1

Location

Chromosome 19: 25,476,228-25,512,695 forward strand.

GRCz11:CM002903.2

About this gene

This gene has 4 transcripts (splice variants), 84 orthologues and 52 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000112808.5	col28a1a-201	5252	1170aa	ENSDARP00000102543.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C0H5W1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000144300.2	col28a1a-204	940	313aa	ENSDARP00000113514.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A5WUK1	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000132934.3	col28a1a-202	936	312aa	ENSDARP00000117274.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A5WUJ9	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000143292.2	col28a1a-203	730	133aa	ENSDARP00000118649.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QAY3	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

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Summary

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