Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: cspg5a ENSDARG00000069981

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Description

chondroitin sulfate proteoglycan 5a [Source:ZFIN;Acc:ZDB-GENE-080425-4]

Gene Synonyms

cspg5

Location

Chromosome 16: 42,319,438-42,390,640 reverse strand.

GRCz11:CM002900.2

About this gene

This gene has 4 transcripts (splice variants), 174 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000148475.2	cspg5a-202	2265	532aa	ENSDARP00000124012.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8W3W2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000102305.5	cspg5a-201	5148	507aa	ENSDARP00000093081.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6PCZ4	-
ENSDART00000193214.1	cspg5a-204	5091	488aa	ENSDARP00000148611.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8RMD7	-
ENSDART00000148635.2	cspg5a-203	1370	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

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Summary

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