Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: zgc:109889 ENSDARG00000069600

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Description

zgc:109889 [Source:NCBI gene (formerly Entrezgene);Acc:553542]

Location

Chromosome 7: 23,495,986-23,543,642 forward strand.

GRCz11:CM002891.2

About this gene

This gene has 6 transcripts (splice variants), 106 orthologues and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000101423.5	zgc:109889-201	1207	279aa	ENSDARP00000092197.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q504G6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000186189.1	zgc:109889-204	5480	512aa	ENSDARP00000148402.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8JHQ5	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000142401.3	zgc:109889-203	5087	512aa	ENSDARP00000122310.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8JHQ5	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000190739.1	zgc:109889-206	2639	540aa	ENSDARP00000147184.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M1P3G3	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000186893.1	zgc:109889-205	862	279aa	ENSDARP00000154414.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q504G6	-
ENSDART00000115299.5	zgc:109889-202	735	172aa	ENSDARP00000102646.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

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Summary

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