Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SNX9 ENSDARG00000069302

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Description

sorting nexin 9b [Source:ZFIN;Acc:ZDB-GENE-031118-50]

Location

Chromosome 20: 43,016,437-43,079,481 reverse strand.

GRCz11:CM002904.2

About this gene

This gene has 4 transcripts (splice variants), 199 orthologues and 20 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000060982.6	SNX9-204	2799	581aa	ENSDARP00000060981.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5SPP2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000060938.8	SNX9-202	2965	253aa	ENSDARP00000060937.6	Nonsense mediated decay	-	-
ENSDART00000153078.2	SNX9-201	494	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000152867.2	SNX9-203	389	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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