Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: per1a ENSDARG00000056885

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Description

period circadian clock 1a [Source:NCBI gene (formerly Entrezgene);Acc:563926]

Location

Chromosome 10: 22,809,715-22,831,611 reverse strand.

GRCz11:CM002894.2

About this gene

This gene has 3 transcripts (splice variants), 141 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000100468.4	per1a-202	4209	1352aa	ENSDARP00000091241.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000160115.3	per1a-203	7377	1387aa	ENSDARP00000131343.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4ICG0	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000079459.5	per1a-201	3690	1229aa	ENSDARP00000073915.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7SZZ4	-

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Summary

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