Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: frg1 ENSDARG00000056504

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Description

FSHD region gene 1 [Source:ZFIN;Acc:ZDB-GENE-050417-324]

Gene Synonyms

zgc:112426

Location

Chromosome 1: 16,673,841-16,689,023 reverse strand.

GRCz11:CM002885.2

About this gene

This gene has 5 transcripts (splice variants) and 261 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000178599.2	frg1-205	2707	255aa	ENSDARP00000143283.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q566W5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000079001.5	frg1-201	1154	255aa	ENSDARP00000073458.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q566W5	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000159038.2	frg1-203	426	71aa	ENSDARP00000131976.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0M3HEL7	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000162729.2	frg1-204	816	144aa	ENSDARP00000136721.1	Nonsense mediated decay	A0A0M3HEN0	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000158166.2	frg1-202	881	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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