Gene: vsx1 ENSDARG00000056292

Description

visual system homeobox 1 homolog, chx10-like [Source:NCBI gene;Acc:30598]

Gene Synonyms

etID309864.17

Location

GRCz11:CM002901.2

About this gene

This gene has 2 transcripts (splice variants), 174 orthologues and is associated with 13 phenotypes.

Transcripts

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000104327.7	vsx1-202	1582	340aa	ENSDARP00000095102.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QBH3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000078763.3	vsx1-201	1563	344aa	ENSDARP00000073224.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QTW3	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,

Summary