Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: rbm4.2 ENSDARG00000055080

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Description

RNA binding motif protein 4.2 [Source:ZFIN;Acc:ZDB-GENE-030131-3019]

Gene Synonyms

rbm4l, wu:fc25a01

Location

Chromosome 7: 22,796,083-22,801,248 forward strand.

GRCz11:CM002891.2

About this gene

This gene has 5 transcripts (splice variants), 61 orthologues and 46 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000112169.6	rbm4.2-202	2575	384aa	ENSDARP00000102928.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q7F8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000146368.2	rbm4.2-205	2054	384aa	ENSDARP00000118556.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q7F8	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000077395.6	rbm4.2-201	2029	384aa	ENSDARP00000071862.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q7F8	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000140914.2	rbm4.2-204	1036	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000133632.2	rbm4.2-203	750	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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