Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: hhla2a.1 ENSDARG00000043182

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Description

HERV-H LTR-associating 2a, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050327-45]

Gene Synonyms

zgc:113255

Location

Chromosome 10: 35,417,099-35,437,624 forward strand.

GRCz11:CM002894.2

About this gene

This gene has 2 transcripts (splice variants), 42 orthologues and 94 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000063398.6	hhla2a.1-201	1468	324aa	ENSDARP00000063397.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q58EM0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000147303.2	hhla2a.1-202	825	169aa	ENSDARP00000118470.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QIT0	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

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Summary

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