Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: HMG20B ENSDARG00000042045

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Description

high mobility group 20B [Source:ZFIN;Acc:ZDB-GENE-030131-4258]

Gene Synonyms

fc85b02, si:dkey-110c1.6, wu:fc85b02, zgc:110001

Location

Chromosome 22: 20,169,352-20,181,597 forward strand.

GRCz11:CM002906.2

About this gene

This gene has 3 transcripts (splice variants), 191 orthologues and 19 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000061617.6	HMG20B-201	1555	301aa	ENSDARP00000061616.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q503Z1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000188104.1	HMG20B-202	4652	301aa	ENSDARP00000146990.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q503Z1	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000169055.2	HMG20B-203	1075	298aa	ENSDARP00000139903.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IWQ8	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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