Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: tnfaip1 ENSDARG00000041565

.

Description

tumor necrosis factor, alpha-induced protein 1 (endothelial) [Source:NCBI gene (formerly Entrezgene);Acc:327399]

Location

Chromosome 15: 20,529,197-20,541,185 forward strand.

GRCz11:CM002899.2

About this gene

This gene has 5 transcripts (splice variants), 223 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000060935.8	tnfaip1-201	1928	320aa	ENSDARP00000060934.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R5K5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000186312.1	tnfaip1-205	994	320aa	ENSDARP00000153764.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R5K5	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000140087.3	tnfaip1-204	873	242aa	ENSDARP00000115718.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000137926.3	tnfaip1-203	765	180aa	ENSDARP00000116264.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000136520.2	tnfaip1-202	827	103aa	ENSDARP00000124995.1	Nonsense mediated decay	-	-

.

Summary

.

.