Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: zgc:92380 ENSDARG00000041339

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Description

zgc:92380 [Source:ZFIN;Acc:ZDB-GENE-040801-221]

Location

Chromosome 9: 48,007,081-48,039,964 forward strand.

GRCz11:CM002893.2

About this gene

This gene has 2 transcripts (splice variants), 17 orthologues and 57 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000099835.7	zgc:92380-202	1712	501aa	ENSDARP00000090608.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FAL7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000060593.9	zgc:92380-201	1677	384aa	ENSDARP00000060592.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6DBU4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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