Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: p4ha1a ENSDARG00000033537

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Description

prolyl 4-hydroxylase, alpha polypeptide I a [Source:ZFIN;Acc:ZDB-GENE-040724-91]

Location

Chromosome 12: 9,542,124-9,585,670 forward strand.

GRCz11:CM002896.2

About this gene

This gene has 3 transcripts (splice variants), 113 orthologues and 8 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000127952.3	p4ha1a-202	2239	541aa	ENSDARP00000105672.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FEB4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000048493.6	p4ha1a-201	1626	541aa	ENSDARP00000048492.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QCL7	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000166178.2	p4ha1a-203	1569	522aa	ENSDARP00000137147.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IQ20	-

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Summary

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