Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: pacsin1a ENSDARG00000032865

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Description

protein kinase C and casein kinase substrate in neurons 1a [Source:NCBI gene (formerly Entrezgene);Acc:553559]

Location

Chromosome 23: 3,653,386-3,703,569 reverse strand.

GRCz11:CM002907.2

About this gene

This gene has 6 transcripts (splice variants), 202 orthologues and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000192128.1	pacsin1a-206	3374	438aa	ENSDARP00000148261.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R9YJM4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000134830.3	pacsin1a-204	1415	438aa	ENSDARP00000114722.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R9YJM4	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000040086.8	pacsin1a-201	1053	260aa	ENSDARP00000040085.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000057422.6	pacsin1a-202	790	260aa	ENSDARP00000057421.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000143731.2	pacsin1a-205	650	163aa	ENSDARP00000113630.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000131568.2	pacsin1a-203	882	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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