Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: col9a2 ENSDARG00000024492

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Description

procollagen, type IX, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-9786]

Gene Synonyms

cb343, sb:cb343, wu:fa12h02, wu:fc93e05, zgc:100808

Location

Chromosome 19: 38,422,059-38,467,554 forward strand.

GRCz11:CM002903.2

About this gene

This gene has 3 transcripts (splice variants), 150 orthologues and 52 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000035093.9	col9a2-201	3163	691aa	ENSDARP00000037624.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1LXU2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000148139.2	col9a2-203	823	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000140198.2	col9a2-202	720	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

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Summary

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