Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: rhobtb4 ENSDARG00000016868

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Description

Rho related BTB domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-060315-11]

Location

Chromosome 5: 43,427,841-43,502,675 forward strand.

GRCz11:CM002889.2

About this gene

This gene has 3 transcripts (splice variants), 102 orthologues and 42 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000111587.4	rhobtb4-202	2273	716aa	ENSDARP00000103939.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2BI17	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000177895.2	rhobtb4-203	3021	716aa	ENSDARP00000144243.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2BI17	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000051114.8	rhobtb4-201	2190	729aa	ENSDARP00000051113.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RD19	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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