Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: HDAC1 ENSDARG00000015427

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Description

histone deacetylase 1 [Source:ZFIN;Acc:ZDB-GENE-020419-32]

Location

Chromosome 19: 29,808,471-29,821,601 forward strand.

GRCz11:CM002903.2

About this gene

This gene has 5 transcripts (splice variants), 252 orthologues, 11 paralogues and is associated with 163 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000051799.6	HDAC1-202	2242	480aa	ENSDARP00000051798.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000186428.1	HDAC1-205	5435	484aa	ENSDARP00000155165.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QIW0	-
ENSDART00000164205.2	HDAC1-204	1439	472aa	ENSDARP00000133315.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000148935.2	HDAC1-203	1249	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000149128.2	HDAC1-201	849	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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