Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: oxct1a ENSDARG00000013063

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Description

3-oxoacid CoA transferase 1a [Source:ZFIN;Acc:ZDB-GENE-040723-3]

Gene Synonyms

SAGm18B, oxct1, scot, wu:fj36f06, wu:fj48g08, zgc:92003

Location

Chromosome 8: 31,716,872-31,818,916 forward strand.

GRCz11:CM002892.2

About this gene

This gene has 5 transcripts (splice variants), 272 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000013434.11	oxct1a-201	2666	525aa	ENSDARP00000002234.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6AZB2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000161121.2	oxct1a-205	2131	563aa	ENSDARP00000135220.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IJ61	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000141226.2	oxct1a-203	830	113aa	ENSDARP00000112626.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1REG7	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000142519.3	oxct1a-204	719	78aa	ENSDARP00000118282.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B0S6X0	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000137302.2	oxct1a-202	492	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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