Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: prg4a ENSDARG00000010482

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Description

proteoglycan 4a [Source:ZFIN;Acc:ZDB-GENE-030131-8295]

Gene Synonyms

fb08a02, wu:fb08a02, wu:fk21a06, zgc:56698

Location

Chromosome 2: 20,793,982-20,812,059 forward strand.

GRCz11:CM002886.2

About this gene

This gene has 3 transcripts (splice variants), 172 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000014785.8	prg4a-201	1956	486aa	ENSDARP00000012078.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8JMI5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000142321.2	prg4a-203	894	298aa	ENSDARP00000119443.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R2Z8	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000139346.2	prg4a-202	467	129aa	ENSDARP00000122746.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8JMI4	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

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Summary

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