Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: STXBP5L ENSDARG00000006383

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Description

syntaxin binding protein 5L [Source:ZFIN;Acc:ZDB-GENE-041210-220]

Location

Chromosome 9: 27,415,754-27,649,406 reverse strand.

GRCz11:CM002893.2

About this gene

This gene has 4 transcripts (splice variants), 215 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000017292.10	STXBP5L-202	3908	1159aa	ENSDARP00000027152.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5SQE2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000181270.1	STXBP5L-203	4269	1181aa	ENSDARP00000153693.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QFD7	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000187112.1	STXBP5L-204	4200	1158aa	ENSDARP00000147177.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8Q0L1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000138602.2	STXBP5L-201	643	214aa	ENSDARP00000117512.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

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Summary

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