Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Cellular component
- GO: Biological process
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: ptp4a1 ENSDARG00000006242

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Description

protein tyrosine phosphatase 4A1 [Source:ZFIN;Acc:ZDB-GENE-041121-11]

Location

Chromosome 11: 11,267,493-11,274,919 forward strand.

GRCz11:CM002895.2

About this gene

This gene has 9 transcripts (splice variants), 268 orthologues and 13 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000026814.10	ptp4a1-201	2002	173aa	ENSDARP00000023049.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QSC9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000148425.3	ptp4a1-203	1411	203aa	ENSDARP00000124821.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000173346.2	ptp4a1-208	821	80aa	ENSDARP00000142090.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000129843.3	ptp4a1-202	727	164aa	ENSDARP00000106040.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000190678.1	ptp4a1-209	541	173aa	ENSDARP00000145165.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QSC9	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000151926.2	ptp4a1-204	135	44aa	ENSDARP00000126441.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000169001.2	ptp4a1-206	1109	184aa	ENSDARP00000137525.1	Nonsense mediated decay	A0A0R4IN05	-
ENSDART00000166489.2	ptp4a1-205	806	201aa	ENSDARP00000139705.1	Nonsense mediated decay	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000172939.2	ptp4a1-207	942	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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