Description
LIM domain 7a [Source:ZFIN;Acc:ZDB-GENE-030219-74]
Gene Synonyms
fc03h03, id:ibd5155, lmo7, si:dkey-57a22.10, wu:fc03h03
Location
Chromosome 9: 21,893,757-21,970,067 reverse strand.
GRCz11:CM002893.2
About this gene
This gene has 13 transcripts (splice variants), 225 orthologues and 3 paralogues.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|
| ENSDART00000009920.11 | lmo7a-201 | 6323 | 1826aa | ENSDARP00000027005.9 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B0UYM8 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, |
| ENSDART00000134768.2 | lmo7a-204 | 1052 | 351aa | ENSDARP00000115609.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F1Q7Z5 | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, |
| ENSDART00000090782.6 | lmo7a-202 | 812 | 270aa | ENSDARP00000085215.5 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B0UYM5 | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, |
| ENSDART00000145576.2 | lmo7a-212 | 754 | 252aa | ENSDARP00000118407.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F1QL17 | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, |
| ENSDART00000144843.2 | lmo7a-210 | 663 | 221aa | ENSDARP00000123670.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F1QJN0 | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, |
| ENSDART00000134084.2 | lmo7a-203 | 625 | 46aa | ENSDARP00000113411.1 | Nonsense mediated decay | E9QJM8 | - |
| ENSDART00000146528.3 | lmo7a-213 | 962 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - |
| ENSDART00000143305.3 | lmo7a-209 | 853 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - |
| ENSDART00000135395.2 | lmo7a-205 | 740 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - |
| ENSDART00000136534.3 | lmo7a-207 | 733 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - |
| ENSDART00000145085.2 | lmo7a-211 | 914 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - |
| ENSDART00000139614.2 | lmo7a-208 | 895 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - |
| ENSDART00000136349.2 | lmo7a-206 | 824 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - |
