Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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Pathway
Molecular interactions
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ID History
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Gene: gtf3c2 ENSDARG00000004574

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Description

general transcription factor IIIC, polypeptide 2, beta [Source:ZFIN;Acc:ZDB-GENE-041014-349]

Location

Chromosome 20: 38,543,314-38,584,161 forward strand.

GRCz11:CM002904.2

About this gene

This gene has 4 transcripts (splice variants) and 193 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000020969.9	gtf3c2-201	3253	853aa	ENSDARP00000008672.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R215	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000101262.6	gtf3c2-202	2692	830aa	ENSDARP00000092036.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5RHA2	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000153416.3	gtf3c2-204	751	151aa	ENSDARP00000127096.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000145254.3	gtf3c2-203	650	151aa	ENSDARP00000115569.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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