Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: COPA ENSDARG00000004173

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Description

COPI coat complex subunit alpha [Source:ZFIN;Acc:ZDB-GENE-020905-2]

Location

Chromosome 2: 37,176,814-37,206,080 forward strand.

GRCz11:CM002886.2

About this gene

This gene has 5 transcripts (splice variants), 212 orthologues, 1 paralogue and is associated with 37 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000048277.8	COPA-204	4131	1224aa	ENSDARP00000048276.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000176827.2	COPA-205	2062	538aa	ENSDARP00000143620.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
ENSDART00000111382.4	COPA-201	784	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-
ENSDART00000136159.3	COPA-203	717	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-
ENSDART00000138874.2	COPA-202	791	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

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Summary

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