Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: afap1l1a ENSDARG00000089162

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Description

actin filament associated protein 1-like 1a [Source:NCBI gene (formerly Entrezgene);Acc:566757]

Location

Chromosome 14: 34,562,426-34,633,960 reverse strand.

GRCz11:CM002898.2

About this gene

This gene has 4 transcripts (splice variants), 200 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000128869.4	afap1l1a-201	2970	747aa	ENSDARP00000111322.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000179977.1	afap1l1a-203	2540	746aa	ENSDARP00000145106.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AB32T0C8	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000191608.1	afap1l1a-204	2283	760aa	ENSDARP00000152800.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8RU06	-
ENSDART00000144547.2	afap1l1a-202	1031	278aa	ENSDARP00000122062.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

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Summary

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