Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: tpm1 ENSDARG00000087402

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Description

tropomyosin 1 (alpha) [Source:NCBI gene (formerly Entrezgene);Acc:393908]

Location

Chromosome 25: 33,192,404-33,250,323 forward strand.

GRCz11:CM002909.2

About this gene

This gene has 7 transcripts (splice variants), 289 orthologues and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000193592.1	tpm1-207	4798	284aa	ENSDARP00000155971.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000181051.1	tpm1-205	4826	247aa	ENSDARP00000151393.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000192378.1	tpm1-206	3872	247aa	ENSDARP00000150453.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8RQ88	-
ENSDART00000121680.3	tpm1-202	1742	284aa	ENSDARP00000112368.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6NYQ0	-
ENSDART00000131098.3	tpm1-204	1595	247aa	ENSDARP00000108795.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A7E2K1	-
ENSDART00000125892.3	tpm1-203	1256	284aa	ENSDARP00000111203.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7ZVK9	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000014851.9	tpm1-201	856	284aa	ENSDARP00000002483.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FBZ3	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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