Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: rubcn ENSDARG00000078752

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Location

Chromosome 22: 35,275,206-35,312,649 forward strand.

GRCz11:CM002906.2

About this gene

This gene has 5 transcripts (splice variants), 81 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000185352.1	rubcn-204	2871	956aa	ENSDARP00000149590.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000112234.5	rubcn-201	3007	914aa	ENSDARP00000101878.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q4W5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000189516.1	rubcn-205	2823	940aa	ENSDARP00000152937.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000165353.2	rubcn-202	2793	930aa	ENSDARP00000137353.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0N5E8A0	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000181572.1	rubcn-203	2718	905aa	ENSDARP00000146494.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8RJG6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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