Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: shc1 ENSDARG00000075437

.

Description

SHC adaptor protein 1 [Source:HGNC Symbol;Acc:HGNC:10840]

Location

Chromosome 16: 22,781,854-22,863,603 reverse strand.

GRCz11:CM002900.2

About this gene

This gene has 5 transcripts (splice variants), 212 orthologues, 3 paralogues and is associated with 5 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000098400.5	shc1-201	4373	454aa	ENSDARP00000089171.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7F3T0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000183963.1	shc1-205	4319	436aa	ENSDARP00000152313.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000147609.3	shc1-204	3920	449aa	ENSDARP00000123188.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QCZ8	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000133607.2	shc1-202	840	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000133910.3	shc1-203	740	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

.

Summary

.

.