Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: hoxc10a ENSDARG00000070348

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Description

homeobox C10a [Source:NCBI gene (formerly Entrezgene);Acc:100535576]

Location

Chromosome 23: 35,969,228-36,086,895 forward strand.

GRCz11:CM002907.2

About this gene

This gene has 4 transcripts (splice variants), 189 orthologues and 53 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000184107.1	hoxc10a-204	1872	337aa	ENSDARP00000147493.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6NI81	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000179992.1	hoxc10a-203	1769	337aa	ENSDARP00000156025.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6NI81	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000053295.7	hoxc10a-201	1601	327aa	ENSDARP00000053294.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2BE66	-
ENSDART00000130260.3	hoxc10a-202	1242	337aa	ENSDARP00000111519.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6NI81	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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