Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: vps53 ENSDARG00000069324

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Description

VPS53 subunit of GARP complex [Source:NCBI gene (formerly Entrezgene);Acc:492817]

Location

Chromosome 15: 25,100,726-25,153,403 reverse strand.

GRCz11:CM002899.2

About this gene

This gene has 3 transcripts (splice variants) and 218 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000122184.4	vps53-202	3829	832aa	ENSDARP00000110309.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FAG0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000078095.4	vps53-201	3778	831aa	ENSDARP00000072558.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6P6T6	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000193670.1	vps53-203	477	158aa	ENSDARP00000157632.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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