Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: scn1ba ENSDARG00000060222

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Description

sodium channel, voltage-gated, type I, beta a [Source:NCBI gene (formerly Entrezgene);Acc:555423]

Location

Chromosome 16: 41,873,708-41,897,745 forward strand.

GRCz11:CM002900.2

About this gene

This gene has 5 transcripts (splice variants), 184 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000084631.5	scn1ba-202	1446	221aa	ENSDARP00000079066.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q06W32	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000058611.7	scn1ba-201	1414	209aa	ENSDARP00000058610.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q06W35	-
ENSDART00000084639.7	scn1ba-203	1051	200aa	ENSDARP00000123713.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000161278.2	scn1ba-205	321	106aa	ENSDARP00000134972.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000131491.2	scn1ba-204	598	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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