Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: trub1 ENSDARG00000053805

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Description

TruB pseudouridine (psi) synthase family member 1 [Source:NCBI gene (formerly Entrezgene);Acc:556642]

Location

Chromosome 12: 30,036,425-30,043,906 reverse strand.

GRCz11:CM002896.2

About this gene

This gene has 4 transcripts (splice variants) and 193 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000075889.6	trub1-201	1197	290aa	ENSDARP00000070369.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B3DHG0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000148847.3	trub1-202	892	258aa	ENSDARP00000123987.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000150220.2	trub1-204	400	133aa	ENSDARP00000124035.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000149077.3	trub1-203	973	89aa	ENSDARP00000124954.1	Nonsense mediated decay	-	-

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Summary

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