Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
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ID History
- Gene history

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Gene: sf3a1 ENSDARG00000041887

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Description

splicing factor 3a, subunit 1 [Source:NCBI gene (formerly Entrezgene);Acc:796388]

Location

Chromosome 8: 36,554,816-36,570,665 forward strand.

GRCz11:CM002892.2

About this gene

This gene has 4 transcripts (splice variants) and 208 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000185237.1	sf3a1-204	3167	780aa	ENSDARP00000150615.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q90X41	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000126687.4	sf3a1-202	3057	780aa	ENSDARP00000108576.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q90X41	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000061378.3	sf3a1-201	2756	780aa	ENSDARP00000061377.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q90X41	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000136418.3	sf3a1-203	705	171aa	ENSDARP00000113481.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

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Summary

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