Gene: havcr1 ENSDARG00000040178

Description

hepatitis A virus cellular receptor 1 [Source:NCBI gene (formerly Entrezgene);Acc:436707]

Location

Chromosome 21: 29,100,972-29,110,607 reverse strand.

GRCz11:CM002905.2

About this gene

This gene has 6 transcripts (splice variants), 69 orthologues, 4 paralogues and is associated with 1 phenotype.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000134238.3	havcr1-203	910	291aa	ENSDARP00000113226.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000181595.1	havcr1-206	3037	324aa	ENSDARP00000154233.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QGQ2	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000058774.6	havcr1-201	1004	264aa	ENSDARP00000058773.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6DH50	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000133318.3	havcr1-202	917	293aa	ENSDARP00000119490.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000134782.2	havcr1-204	840	280aa	ENSDARP00000120530.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000142625.2	havcr1-205	790	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Gene: havcr1 ENSDARG00000040178

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Gene: havcr1 ENSDARG00000040178

Summary

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