Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: ptp4a2b ENSDARG00000035676

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Description

protein tyrosine phosphatase 4A2b [Source:NCBI gene (formerly Entrezgene);Acc:334483]

Location

Chromosome 19: 35,455,172-35,492,784 reverse strand.

GRCz11:CM002903.2

About this gene

This gene has 4 transcripts (splice variants), 250 orthologues and 13 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000051745.5	ptp4a2b-201	2222	168aa	ENSDARP00000051744.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6TLG9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000177052.2	ptp4a2b-204	5641	174aa	ENSDARP00000144262.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5U3R3	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000135838.2	ptp4a2b-203	816	152aa	ENSDARP00000121313.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000131786.2	ptp4a2b-202	497	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

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Summary

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