Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: atp2a1l ENSDARG00000035458

.

Description

ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1, like [Source:NCBI gene (formerly Entrezgene);Acc:494489]

Location

Chromosome 12: 13,244,149-13,263,658 forward strand.

GRCz11:CM002896.2

About this gene

This gene has 3 transcripts (splice variants), 174 orthologues and 26 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000105896.5	atp2a1l-201	3701	991aa	ENSDARP00000096674.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0JMP4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000186984.1	atp2a1l-203	5605	993aa	ENSDARP00000146974.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8RK22	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000144542.3	atp2a1l-202	927	210aa	ENSDARP00000114756.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

.

Summary

.

.