Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: trim54 ENSDARG00000029907

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Description

tripartite motif containing 54 [Source:NCBI gene (formerly Entrezgene);Acc:563772]

Location

Chromosome 20: 38,730,291-38,758,797 reverse strand.

GRCz11:CM002904.2

About this gene

This gene has 2 transcripts (splice variants), 154 orthologues and 139 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000061394.7	trim54-201	1522	359aa	ENSDARP00000061393.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5RHH1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000140275.2	trim54-202	429	122aa	ENSDARP00000120891.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

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Summary

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