Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: atp6v1c1a ENSDARG00000023967

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Description

ATPase H+ transporting V1 subunit C1a [Source:NCBI gene (formerly Entrezgene);Acc:368907]

Location

Chromosome 16: 52,748,263-52,767,591 forward strand.

GRCz11:CM002900.2

About this gene

This gene has 3 transcripts (splice variants), 152 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000032275.9	atp6v1c1a-201	1869	383aa	ENSDARP00000029343.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B2GPU0 Q7T385	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000191807.1	atp6v1c1a-203	1163	383aa	ENSDARP00000147247.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B2GPU0 Q7T385	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000138494.2	atp6v1c1a-202	387	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

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Summary

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