Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: tpm4a ENSDARG00000023963

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Description

tropomyosin 4a [Source:NCBI gene (formerly Entrezgene);Acc:406437]

Location

Chromosome 22: 15,577,827-15,602,760 reverse strand.

GRCz11:CM002906.2

About this gene

This gene has 5 transcripts (splice variants), 243 orthologues, 5 paralogues and is associated with 15 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000036075.8	tpm4a-202	2384	284aa	ENSDARP00000034733.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R412	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000123125.3	tpm4a-203	2842	248aa	ENSDARP00000105889.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7T3F0	-
ENSDART00000142717.3	tpm4a-205	1261	204aa	ENSDARP00000114668.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000009054.8	tpm4a-201	1119	284aa	ENSDARP00000015843.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000138978.3	tpm4a-204	743	204aa	ENSDARP00000121408.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

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Summary

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