Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: pabpc1b ENSDARG00000021140

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Description

poly A binding protein, cytoplasmic 1 b [Source:NCBI gene (formerly Entrezgene);Acc:393856]

Location

Chromosome 19: 12,121,944-12,145,765 reverse strand.

GRCz11:CM002903.2

About this gene

This gene has 4 transcripts (splice variants), 151 orthologues and 28 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000032474.11	pabpc1b-201	2804	634aa	ENSDARP00000034822.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6P3L1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000143087.3	pabpc1b-203	742	207aa	ENSDARP00000117257.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000151056.2	pabpc1b-204	1062	142aa	ENSDARP00000126202.1	Nonsense mediated decay	-	-
ENSDART00000136324.2	pabpc1b-202	529	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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